3D structure

PDB id
4WSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSM_248 not in the Motif Atlas
Homologous match to HL_4LFB_003
Geometric discrepancy: 0.1612
The information below is about HL_4LFB_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

4WSM|1|1G|G|158
4WSM|1|1G|G|159
4WSM|1|1G|A|160
4WSM|1|1G|A|161
4WSM|1|1G|A|162
4WSM|1|1G|C|163

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain BA
30S ribosomal protein S20

Coloring options:


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