HL_4WSM_252
3D structure
- PDB id
- 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- G(5MU)(PSU)CAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSM_252 not in the Motif Atlas
- Homologous match to HL_5E81_213
- Geometric discrepancy: 0.1465
- The information below is about HL_5E81_213
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4WSM|1|2L|G|64
4WSM|1|2L|5MU|65
4WSM|1|2L|PSU|66
4WSM|1|2L|C|67
4WSM|1|2L|A|68
4WSM|1|2L|A|69
4WSM|1|2L|G|70
4WSM|1|2L|U|71
4WSM|1|2L|C|72
Current chains
- Chain 2L
- tRNA-Leu
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain 49
- 50S ribosomal protein L5
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