HL_4WT1_052

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4WT1|1|14|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_052 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.3523

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4WT1|1|14|C|641
4WT1|1|14|G|642
4WT1|1|14|A|643
4WT1|1|14|A|644
4WT1|1|14|C|645
4WT1|1|14|A|646
4WT1|1|14|G|647

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain K5

50S ribosomal protein L33

Chain M5

50S ribosomal protein L35