HL_4WT1_071

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_071 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.388

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4WT1|1|14|C|1532
4WT1|1|14|C|1533
4WT1|1|14|G|1534
4WT1|1|14|U|1535
4WT1|1|14|A|1536
4WT1|1|14|C|1537
4WT1|1|14|G|1538
4WT1|1|14|G|1539

Current chains

Chain 14

23S ribosomal RNA

Nearby chains