3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WT1_142 not in the Motif Atlas
Homologous match to HL_7A0S_007
Geometric discrepancy: 0.3239
The information below is about HL_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53890.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
15

Unit IDs

4WT1|1|1H|A|225
4WT1|1|1H|G|226
4WT1|1|1H|A|227
4WT1|1|1H|A|228
4WT1|1|1H|A|229
4WT1|1|1H|U|230

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 78
50S ribosomal protein L15

Coloring options:


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