HL_4WT1_160

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4WT1|1|1H|A|781, 4WT1|1|1H|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_160 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1196

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

4WT1|1|1H|U|779
4WT1|1|1H|G|780
4WT1|1|1H|A|781
4WT1|1|1H|A|782
4WT1|1|1H|A|783
4WT1|1|1H|A|784
4WT1|1|1H|G|785

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2