HL_4WT1_256

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4WT1|1|3K|U|16, 4WT1|1|3K|C|17, 4WT1|1|3K|G|18, 4WT1|1|3K|G|19, 4WT1|1|3K|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_256 not in the Motif Atlas

Homologous match to HL_5E7K_218

Geometric discrepancy: 0.3011

The information below is about HL_5E7K_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4WT1|1|3K|C|13
4WT1|1|3K|A|14
4WT1|1|3K|G|15
4WT1|1|3K|U|16
4WT1|1|3K|C|17
4WT1|1|3K|G|18
4WT1|1|3K|G|19
4WT1|1|3K|U|20
4WT1|1|3K|A|21
4WT1|1|3K|G|22

Current chains

Chain 3K

tRNA-Phe

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA