HL_4WU1_034

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WU1_034 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.111

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4WU1|1|14|C|87
4WU1|1|14|G|88
4WU1|1|14|G|89
4WU1|1|14|U|90
4WU1|1|14|A|91
4WU1|1|14|G|92
4WU1|1|14|C|93
4WU1|1|14|G|94
4WU1|1|14|G|95

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain C5

50S ribosomal protein L24

Chain G5

50S ribosomal protein L29