HL_4WU1_067

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4WU1|1|14|G|1325, 4WU1|1|14|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WU1_067 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0912

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WU1|1|14|G|1324
4WU1|1|14|G|1325
4WU1|1|14|U|1326
4WU1|1|14|C|1327
4WU1|1|14|G|1328
4WU1|1|14|U|1329
4WU1|1|14|C|1330

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22