HL_4WU1_209

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG(OMG)GCCAAAG

Length

12 nucleotides

Bulged bases

4WU1|1|2K|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WU1_209 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.2668

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

4WU1|1|2K|C|12
4WU1|1|2K|G|13
4WU1|1|2K|A|14
4WU1|1|2K|G|15
4WU1|1|2K|OMG|17
4WU1|1|2K|G|18
4WU1|1|2K|C|19
4WU1|1|2K|C|20
4WU1|1|2K|A|21
4WU1|1|2K|A|22
4WU1|1|2K|A|23
4WU1|1|2K|G|24

Current chains

Chain 2K

tRNA-Tyr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 41

50S ribosomal protein L5