HL_4WU1_221
3D structure
- PDB id
- 4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4WU1|1|3L|A|68
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WU1_221 not in the Motif Atlas
- Homologous match to HL_4JYZ_003
- Geometric discrepancy: 0.3048
- The information below is about HL_4JYZ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4WU1|1|3L|G|62
4WU1|1|3L|5MU|63
4WU1|1|3L|PSU|64
4WU1|1|3L|C|65
4WU1|1|3L|G|66
4WU1|1|3L|A|67
4WU1|1|3L|A|68
4WU1|1|3L|U|69
4WU1|1|3L|C|70
Current chains
- Chain 3L
- tRNA-Tyr
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 79
- 50S ribosomal protein L1
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