HL_4WZD_140

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

4WZD|1|1H|U|163||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_140 not in the Motif Atlas

Geometric match to HL_8S95_003

Geometric discrepancy: 0.3412

The information below is about HL_8S95_003

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4WZD|1|1H|C|155||||P_1
4WZD|1|1H|U|161||||P_1
4WZD|1|1H|U|162||||P_1
4WZD|1|1H|U|163||||P_1
4WZD|1|1H|U|164||||P_1
4WZD|1|1H|U|165||||P_1
4WZD|1|1H|G|171||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28