HL_4WZD_168

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_168 not in the Motif Atlas

Homologous match to HL_9DFE_031

Geometric discrepancy: 0.0731

The information below is about HL_9DFE_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4WZD|1|1H|G|1281||||P_1
4WZD|1|1H|U|1282||||P_1
4WZD|1|1H|G|1283||||P_1
4WZD|1|1H|A|1284||||P_1
4WZD|1|1H|G|1285||||P_1
4WZD|1|1H|A|1286||||P_1
4WZD|1|1H|A|1287||||P_1
4WZD|1|1H|U|1288||||P_1
4WZD|1|1H|C|1289||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22