HL_4WZD_214

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGC(OMG)GCCAAAG

Length

13 nucleotides

Bulged bases

4WZD|1|3K|C|16||||P_1, 4WZD|1|3K|G|18||||P_1

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_214 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.2238

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

4WZD|1|3K|C|12||||P_1
4WZD|1|3K|G|13||||P_1
4WZD|1|3K|A|14||||P_1
4WZD|1|3K|G|15||||P_1
4WZD|1|3K|C|16||||P_1
4WZD|1|3K|OMG|17||||P_1
4WZD|1|3K|G|18||||P_1
4WZD|1|3K|C|19||||P_1
4WZD|1|3K|C|20||||P_1
4WZD|1|3K|A|21||||P_1
4WZD|1|3K|A|22||||P_1
4WZD|1|3K|A|23||||P_1
4WZD|1|3K|G|24||||P_1

Current chains

Chain 3K

tRNA-Tyr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1