HL_4WZD_223

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_223 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2958

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WZD|1|13|C|1264||||P_1
4WZD|1|13|G|1265||||P_1
4WZD|1|13|G|1266||||P_1
4WZD|1|13|C|1267||||P_1
4WZD|1|13|A|1268||||P_1
4WZD|1|13|A|1269||||P_1
4WZD|1|13|C|1270||||P_1
4WZD|1|13|G|1271||||P_1

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1F

30S ribosomal protein Thx

Chain 4I

30S ribosomal protein S13

Chain AI

30S ribosomal protein S19