HL_4WZO_213

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU(PSU)CAAAUC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZO_213 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.2484

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_22280.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

71

Unit IDs

4WZO|1|2L|G|54
4WZO|1|2L|U|55
4WZO|1|2L|PSU|56
4WZO|1|2L|C|57
4WZO|1|2L|A|58
4WZO|1|2L|A|59
4WZO|1|2L|A|60
4WZO|1|2L|U|61
4WZO|1|2L|C|62

Current chains

Chain 2L

tRNA-fMet

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16

Chain 49

50S ribosomal protein L5