HL_4WZO_215

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZO_215 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.404

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4WZO|1|3K|G|53
4WZO|1|3K|U|54
4WZO|1|3K|PSU|55
4WZO|1|3K|C|56
4WZO|1|3K|G|57
4WZO|1|3K|A|58
4WZO|1|3K|U|59
4WZO|1|3K|U|60
4WZO|1|3K|C|61

Current chains

Chain 3K

tRNA-Phe

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1