HL_4X0A_003

3D structure

PDB id

4X0A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA-processing enzyme complex 6

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4X0A_003 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.1219

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

4X0A|1|B|G|52
4X0A|1|B|U|53
4X0A|1|B|U|54
4X0A|1|B|C|55
4X0A|1|B|G|56
4X0A|1|B|A|57
4X0A|1|B|U|58
4X0A|1|B|U|59
4X0A|1|B|C|60

Current chains

Chain B

RNA (73-MER)

Nearby chains

Chain A

Poly A polymerase