HL_4X4T_001
3D structure
- PDB id
- 4X4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACCA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- G(5BU)UCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4X4T|1|B|U|14
- QA status
- Modified nucleotides: 5BU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4X4T_001 not in the Motif Atlas
- Geometric match to HL_3RG5_008
- Geometric discrepancy: 0.1467
- The information below is about HL_3RG5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4X4T|1|B|G|12
4X4T|1|B|5BU|13
4X4T|1|B|U|14
4X4T|1|B|C|15
4X4T|1|B|G|16
4X4T|1|B|A|17
4X4T|1|B|A|18
4X4T|1|B|U|19
4X4T|1|B|C|20
Current chains
- Chain B
- G70A tRNA minihelix ending in CCACCA
Nearby chains
- Chain A
- CCA-adding enzyme
- Chain E
- CCA-adding enzyme
- Chain I
- RNA (5'-D(P*GP*G)-3')
Coloring options: