HL_4Y1J_003
3D structure
- PDB id
- 4Y1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.24 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43074.2
- Basepair signature
- cWW-tSH-R-R
- Number of instances in this motif group
- 253
Unit IDs
4Y1J|1|A|C|76
4Y1J|1|A|G|77
4Y1J|1|A|A|78
4Y1J|1|A|A|79
4Y1J|1|A|A|80
4Y1J|1|A|G|81
Current chains
- Chain A
- yybP-ykoY riboswitch
Nearby chains
- Chain B
- yybP-ykoY riboswitch
Coloring options: