HL_4Y1J_006

3D structure

PDB id

4Y1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.24 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y1J_006 not in the Motif Atlas

Geometric match to HL_5M0I_002

Geometric discrepancy: 0.0559

The information below is about HL_5M0I_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4Y1J|1|B|C|76
4Y1J|1|B|G|77
4Y1J|1|B|A|78
4Y1J|1|B|A|79
4Y1J|1|B|A|80
4Y1J|1|B|G|81

Current chains

Chain B

yybP-ykoY riboswitch

Nearby chains