HL_4Y4P_035

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4Y4P|1|1A|U|1442, 4Y4P|1|1A|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0575

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4Y4P|1|1A|G|1435
4Y4P|1|1A|U|1436
4Y4P|1|1A|U|1437
4Y4P|1|1A|A|1438
4Y4P|1|1A|A|1439
4Y4P|1|1A|U|1440
4Y4P|1|1A|A|1441
4Y4P|1|1A|U|1442
4Y4P|1|1A|U|1443
4Y4P|1|1A|C|1444

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23