HL_4Y4P_054
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGACGGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4Y4P_054 not in the Motif Atlas
- Homologous match to HL_7RQB_055
- Geometric discrepancy: 0.07
- The information below is about HL_7RQB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4Y4P|1|1A|G|2315
4Y4P|1|1A|G|2316
4Y4P|1|1A|A|2317
4Y4P|1|1A|C|2318
4Y4P|1|1A|G|2319
4Y4P|1|1A|G|2320
4Y4P|1|1A|A|2321
4Y4P|1|1A|A|2322
4Y4P|1|1A|A|2323
4Y4P|1|1A|U|2324
4Y4P|1|1A|C|2325
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 50S ribosomal protein L5
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