HL_4Y4P_124

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4Y4P|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_124 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0631

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4Y4P|1|2A|G|382
4Y4P|1|2A|U|383
4Y4P|1|2A|U|384
4Y4P|1|2A|C|385
4Y4P|1|2A|G|386
4Y4P|1|2A|U|387
4Y4P|1|2A|G|388
4Y4P|1|2A|G|389
4Y4P|1|2A|A|390
4Y4P|1|2A|G|391
4Y4P|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15