HL_4Y4P_169

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_169 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.1312

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4Y4P|1|2A|C|2374
4Y4P|1|2A|G|2375
4Y4P|1|2A|A|2376
4Y4P|1|2A|A|2377
4Y4P|1|2A|A|2378
4Y4P|1|2A|G|2379

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 26

50S ribosomal protein L33

Chain 2S

50S ribosomal protein L18