HL_4Y4P_190

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_190 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0881

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4Y4P|1|2a|C|320
4Y4P|1|2a|A|321
4Y4P|1|2a|C|322
4Y4P|1|2a|U|323
4Y4P|1|2a|G|324
4Y4P|1|2a|A|325
4Y4P|1|2a|G|326
4Y4P|1|2a|A|327
4Y4P|1|2a|C|328
4Y4P|1|2a|A|329
4Y4P|1|2a|C|330
4Y4P|1|2a|G|331
4Y4P|1|2a|G|332
4Y4P|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20