HL_4YBB_041

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4YBB|1|BA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_041 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.0864

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4YBB|1|BA|C|342
4YBB|1|BA|U|343
4YBB|1|BA|A|344
4YBB|1|BA|C|345
4YBB|1|BA|G|346
4YBB|1|BA|G|347

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CL

50S ribosomal protein L14

Chain CQ

50S ribosomal protein L19