HL_4YBB_044

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4YBB|1|BA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_044 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1725

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4YBB|1|BA|G|462
4YBB|1|BA|U|463
4YBB|1|BA|U|464
4YBB|1|BA|A|465
4YBB|1|BA|A|466
4YBB|1|BA|U|467
4YBB|1|BA|A|468
4YBB|1|BA|C|469
4YBB|1|BA|C|470

Current chains

Chain BA

16S rRNA

Nearby chains