HL_4YBB_050

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4YBB|1|BA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_050 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.394

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4YBB|1|BA|C|839
4YBB|1|BA|C|840
4YBB|1|BA|C|841
4YBB|1|BA|U|842
4YBB|1|BA|U|843
4YBB|1|BA|G|844
4YBB|1|BA|A|845
4YBB|1|BA|G|846
4YBB|1|BA|G|847

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BR

30S ribosomal protein S18