HL_4YBB_081

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4YBB|1|CA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_081 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.2176

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|CA|C|611
4YBB|1|CA|G|612
4YBB|1|CA|A|613
4YBB|1|CA|A|614
4YBB|1|CA|U|615
4YBB|1|CA|A|616
4YBB|1|CA|G|617

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4