HL_4YBB_118

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_118 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.25

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|CA|G|2303
4YBB|1|CA|G|2304
4YBB|1|CA|U|2305
4YBB|1|CA|C|2306
4YBB|1|CA|G|2307
4YBB|1|CA|G|2308
4YBB|1|CA|A|2309
4YBB|1|CA|C|2310
4YBB|1|CA|A|2311
4YBB|1|CA|U|2312
4YBB|1|CA|C|2313

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein L5