HL_4YBB_130

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

4YBB|1|CA|U|2797, 4YBB|1|CA|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_130 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.1468

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4YBB|1|CA|C|2795
4YBB|1|CA|U|2796
4YBB|1|CA|U|2797
4YBB|1|CA|U|2798
4YBB|1|CA|A|2799
4YBB|1|CA|A|2800
4YBB|1|CA|G|2801

Current chains

Chain CA

23S rRNA

Nearby chains