HL_4YBB_131

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4YBB|1|CA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_131 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0635

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4YBB|1|CA|G|2819
4YBB|1|CA|A|2820
4YBB|1|CA|A|2821
4YBB|1|CA|G|2822
4YBB|1|CA|A|2823
4YBB|1|CA|C|2824
4YBB|1|CA|G|2825
4YBB|1|CA|A|2826
4YBB|1|CA|C|2827

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CO

50S ribosomal protein L17