HL_4YBB_140

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4YBB|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_140 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0544

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4YBB|1|DA|G|194
4YBB|1|DA|A|195
4YBB|1|DA|A|196
4YBB|1|DA|A|197
4YBB|1|DA|C|198
4YBB|1|DA|A|199
4YBB|1|DA|U|200
4YBB|1|DA|C|201

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15

Chain DY

50S ribosomal protein L28