HL_4YBB_147

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4YBB|1|DA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_147 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0484

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4YBB|1|DA|G|410
4YBB|1|DA|G|411
4YBB|1|DA|A|412
4YBB|1|DA|C|413
4YBB|1|DA|C|414
4YBB|1|DA|A|415
4YBB|1|DA|U|416
4YBB|1|DA|C|417

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15