HL_4YBB_161

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_161 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0527

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4YBB|1|DA|G|978
4YBB|1|DA|A|979
4YBB|1|DA|A|980
4YBB|1|DA|A|981
4YBB|1|DA|C|982
4YBB|1|DA|A|983
4YBB|1|DA|A|984
4YBB|1|DA|C|985

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21