HL_4YBB_174

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

4YBB|1|DA|A|1614, 4YBB|1|DA|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_174 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0372

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4YBB|1|DA|C|1612
4YBB|1|DA|G|1613
4YBB|1|DA|A|1614
4YBB|1|DA|C|1615
4YBB|1|DA|A|1616
4YBB|1|DA|C|1617
4YBB|1|DA|6MZ|1618
4YBB|1|DA|G|1619

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DT

50S ribosomal protein L22