HL_4YBB_226

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

4YBB|1|DA|U|1174, 4YBB|1|DA|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_226 not in the Motif Atlas

Homologous match to HL_5J7L_163

Geometric discrepancy: 0.3399

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4YBB|1|DA|G|1171
4YBB|1|DA|C|1172
4YBB|1|DA|U|1173
4YBB|1|DA|U|1174
4YBB|1|DA|A|1175
4YBB|1|DA|U|1176
4YBB|1|DA|G|1177
4YBB|1|DA|C|1178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15