HL_4YCP_003

3D structure

PDB id

4YCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4YCP|1|B|G|53
4YCP|1|B|U|54
4YCP|1|B|U|55
4YCP|1|B|C|56
4YCP|1|B|G|57
4YCP|1|B|A|58
4YCP|1|B|G|59
4YCP|1|B|U|60
4YCP|1|B|C|61

Current chains

Chain B

tRNATrp

Nearby chains

Chain A

tRNA-dihydrouridine synthase C