HL_4YHH_008

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YHH_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1428

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4YHH|1|A|C|320
4YHH|1|A|A|321
4YHH|1|A|C|322
4YHH|1|A|U|323
4YHH|1|A|G|324
4YHH|1|A|A|325
4YHH|1|A|G|326
4YHH|1|A|A|327
4YHH|1|A|C|328
4YHH|1|A|A|329
4YHH|1|A|C|330
4YHH|1|A|G|331
4YHH|1|A|G|332
4YHH|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20