HL_4YHH_038

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4YHH|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YHH_038 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.18

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4YHH|1|A|G|259
4YHH|1|A|G|260
4YHH|1|A|U|261
4YHH|1|A|A|262
4YHH|1|A|A|263
4YHH|1|A|U|264
4YHH|1|A|G|265
4YHH|1|A|G|266
4YHH|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20