HL_4YPB_005

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

4YPB|1|QA|U|202, 4YPB|1|QA|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_005 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.3386

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4YPB|1|QA|C|201
4YPB|1|QA|U|202
4YPB|1|QA|U|203
4YPB|1|QA|U|204
4YPB|1|QA|G|216

Current chains

Chain QA

16S rRNA

Nearby chains