HL_4YPB_012

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4YPB|1|QA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.281

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4YPB|1|QA|C|458
4YPB|1|QA|G|460
4YPB|1|QA|A|461
4YPB|1|QA|C|470
4YPB|1|QA|G|471
4YPB|1|QA|A|472
4YPB|1|QA|G|473

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16