HL_4YPB_029
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_029 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1037
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4YPB|1|QA|C|1314
4YPB|1|QA|U|1315
4YPB|1|QA|G|1316
4YPB|1|QA|C|1317
4YPB|1|QA|A|1318
4YPB|1|QA|A|1319
4YPB|1|QA|C|1320
4YPB|1|QA|C|1321
4YPB|1|QA|C|1322
4YPB|1|QA|G|1323
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QM
- 30S ribosomal protein S13
- Chain QN
- 30S ribosomal protein S14
- Chain QS
- 30S ribosomal protein S19
Coloring options: