HL_4YPB_050

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4YPB|1|RA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_050 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0865

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YPB|1|RA|G|382
4YPB|1|RA|U|383
4YPB|1|RA|U|384
4YPB|1|RA|C|385
4YPB|1|RA|G|386
4YPB|1|RA|U|387
4YPB|1|RA|G|388
4YPB|1|RA|G|389
4YPB|1|RA|A|390
4YPB|1|RA|G|391
4YPB|1|RA|C|392

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15