3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGGGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YPB_053 not in the Motif Atlas
Homologous match to HL_7RQB_016
Geometric discrepancy: 0.0847
The information below is about HL_7RQB_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

4YPB|1|RA|C|487
4YPB|1|RA|G|488
4YPB|1|RA|G|489
4YPB|1|RA|G|491
4YPB|1|RA|A|492
4YPB|1|RA|G|493

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RW
50S ribosomal protein L22

Coloring options:


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