HL_4YPB_064

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

4YPB|1|RA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|RA|G|883
4YPB|1|RA|C|884
4YPB|1|RA|C|885
4YPB|1|RA|C|886
4YPB|1|RA|A|887
4YPB|1|RA|C|888
4YPB|1|RA|C|889
4YPB|1|RA|A|890
4YPB|1|RA|G|892
4YPB|1|RA|C|893

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13