HL_4YPB_067

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4YPB|1|RA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_067 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2945

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4YPB|1|RA|C|1064
4YPB|1|RA|U|1065
4YPB|1|RA|U|1066
4YPB|1|RA|A|1067
4YPB|1|RA|G|1068
4YPB|1|RA|A|1069
4YPB|1|RA|A|1070
4YPB|1|RA|G|1071
4YPB|1|RA|C|1072
4YPB|1|RA|A|1073
4YPB|1|RA|G|1074

Current chains

Chain RA

23S rRNA

Nearby chains