HL_4YPB_085

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_085 not in the Motif Atlas

Homologous match to HL_7RQB_046

Geometric discrepancy: 0.0741

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4YPB|1|RA|C|1806
4YPB|1|RA|G|1807
4YPB|1|RA|U|1808
4YPB|1|RA|A|1809
4YPB|1|RA|A|1810
4YPB|1|RA|G|1811

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2