HL_4YPB_086

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_086 not in the Motif Atlas

Homologous match to HL_7RQB_047

Geometric discrepancy: 0.1199

The information below is about HL_7RQB_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4YPB|1|RA|U|1864
4YPB|1|RA|G|1865
4YPB|1|RA|C|1866
4YPB|1|RA|A|1876
4YPB|1|RA|A|1877
4YPB|1|RA|G|1878

Current chains

Chain RA

23S rRNA

Nearby chains